Utility

The utility module is collection of functions useful for the analysis.

General

utility.free_memory([cuda])	Garbage collector.
utility.create_report(log_file)	Create a report file.
utility.transfer_labels(adata_original, ...)	Transfer annotation from a subset AnnData to an AnnData.
utility.add_gene_metadata(data, gene_key[, ...])	Add gene metadata to AnnData or DataFrame.
utility.live_display([console, current, ...])	Decorator that displays a live status line and execution time for a function.

Plotting

utility.generate_cmap(*args)	Generate a custom colormap.
utility.extended_tab20([n_shades])	Extends the colormap tab20 to more shades for a color.
utility.get_hex_colormaps(colormap)	Get a list with Hexa IDs for a colormap.
utility.spine_format(axis[, txt, fontsize])	Formatting the spines for embeddings.
utility.tab30()	Create a tab30 colormap.

Spatial

utility.select_slide(adata, s[, s_col])	Subset a Spatial AnnData object.
utility.add_smooth_kernel(adata[, ...])	Compute a smooth kernel, i.e, expression matrix is smooth.