Input/Output: io

The io module contains functions to read and save data.

Objects

io.read_h5ad(path[, filename])	Read .h5ad-formatted hdf5 file.
io.read_visium(path[, counts_file, ...])	Read SpaceRanger output into AnnData Object.
io.read_zarr(path[, filename, backend])	Read from a hierarchical Zarr array store into an AnnData Object.
io.read_rds(path_rds, path_h5ad[, batch_key])	Read Rds object with Seurat or SingleCellExperiment Object.
io.save_rds(path_rds[, batch_key, adata, ...])	Save AnnData as Seurat or SingleCellExperiment Object.
io.read_10x_mtx(path, **kwargs)	Read 10x-Genomics-formatted mtx directory.
io.read_10x_h5(path[, filename])	Read 10x-Genomics-formatted hdf5 file.
io.read_mtx(path[, filename])	Read .mtx file.

DataFrames

io.read_excel(path[, filename, sheet_name, ...])	Read Excel Sheet into a DataFrame.
io.read_csv(path[, filename, delimiter, backend])	Read comma separated files into a DataFrame.
io.read_parquet(path[, filename, backend])	Read a parquet object into a DataFrame.