dotools_py.utility.select_slide

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dotools_py.utility.select_slide#

dotools_py.utility.select_slide(adata, s, s_col='sample')[source]#

Subset a Spatial AnnData object.

This function selects the data for one slide from the spatial AnnData object. Useful when working with Visium data. The keys in adata.uns['spatial'] should be the same as in s_col.

Parameters:
adata AnnData

Anndata object with multiple spatial experiments.

s str

name of selected experiment.

s_col str (default: 'sample')

column in obs listing experiment name for each location.

Return type:

AnnData

Returns:

returns AnnData after subsetting.