dotools_py.io.read_zarr

dotools_py.io.read_zarr#

dotools_py.io.read_zarr(path, filename=None, backend='spatialdata')[source]#

Read from a hierarchical Zarr array store into an AnnData Object.

Parameters:

path: Directory with the Zarr.
filename default: None: Name of the Zarr array. If not specified, assume that path contains the full path to the Zarr directory.
backend default: 'spatialdata': Library to use for reading. If "spatialdata" is selected an SpatialData Object is returned. Currently not implemented.

Returns:

ad.AnnData Returns an ad.AnnData Object.